IL_6SKG_126

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

6SKG|1|BA|G|1468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_126 not in the Motif Atlas

Homologous match to IL_4V9F_051

Geometric discrepancy: 0.1881

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

6SKG|1|BA|G|1455
6SKG|1|BA|C|1456
6SKG|1|BA|A|1457
6SKG|1|BA|A|1458
6SKG|1|BA|U|1459
*
6SKG|1|BA|A|1467
6SKG|1|BA|G|1468
6SKG|1|BA|C|1469

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain BV

50S ribosomal protein L22

Chain Bi

50S ribosomal protein L39e