IL_6SKG_143

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

AGCUAG*UUUGUACU

Length

14 nucleotides

Bulged bases

6SKG|1|BA|U|1929, 6SKG|1|BA|U|1944, 6SKG|1|BA|C|1948

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|A|1926
6SKG|1|BA|G|1927
6SKG|1|BA|C|1928
6SKG|1|BA|U|1929
6SKG|1|BA|A|1930
6SKG|1|BA|G|1931
*
6SKG|1|BA|U|1942
6SKG|1|BA|U|1943
6SKG|1|BA|U|1944
6SKG|1|BA|G|1945
6SKG|1|BA|U|1946
6SKG|1|BA|A|1947
6SKG|1|BA|C|1948
6SKG|1|BA|U|1949

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2

Chain Bg

50S ribosomal protein L37Ae