IL_6SKG_153

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGAG*C(OMU)AC(OMC)C

Length

10 nucleotides

Bulged bases

6SKG|1|BA|A|2543, 6SKG|1|BA|C|2544

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_153 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.2305

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6SKG|1|BA|G|2181
6SKG|1|BA|G|2182
6SKG|1|BA|A|2183
6SKG|1|BA|G|2184
*
6SKG|1|BA|C|2541
6SKG|1|BA|OMU|2542
6SKG|1|BA|A|2543
6SKG|1|BA|C|2544
6SKG|1|BA|OMC|2545
6SKG|1|BA|C|2546

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2