IL_6SKG_159

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCGCAGCGUAG*CC

Length

13 nucleotides

Bulged bases

6SKG|1|BA|C|2223, 6SKG|1|BA|U|2230

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_159 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2663

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6SKG|1|BA|G|2222
6SKG|1|BA|C|2223
6SKG|1|BA|G|2224
6SKG|1|BA|C|2225
6SKG|1|BA|A|2226
6SKG|1|BA|G|2227
6SKG|1|BA|C|2228
6SKG|1|BA|G|2229
6SKG|1|BA|U|2230
6SKG|1|BA|A|2231
6SKG|1|BA|G|2232
*
6SKG|1|BA|C|2290
6SKG|1|BA|C|2291

Current chains

Chain BA

23S ribosomal RNA

Nearby chains