IL_6SKG_171
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GUC*GG(OMC)UU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKG_171 not in the Motif Atlas
- Geometric match to IL_4V9F_084
- Geometric discrepancy: 0.1396
- The information below is about IL_4V9F_084
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_36931.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 26
Unit IDs
6SKG|1|BA|G|2563
6SKG|1|BA|U|2564
6SKG|1|BA|C|2565
*
6SKG|1|BA|G|2593
6SKG|1|BA|G|2594
6SKG|1|BA|OMC|2595
6SKG|1|BA|U|2596
6SKG|1|BA|U|2597
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BJ
- 50S ribosomal protein L10e
- Chain Bp
- Predicted exosome subunit, UPF0023 family
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