IL_6SKG_172

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GCGAG*CGACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_172 not in the Motif Atlas

Homologous match to IL_4V9F_085

Geometric discrepancy: 0.1658

The information below is about IL_4V9F_085

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6SKG|1|BA|G|2570
6SKG|1|BA|C|2571
6SKG|1|BA|G|2572
6SKG|1|BA|A|2573
6SKG|1|BA|G|2574
*
6SKG|1|BA|C|2584
6SKG|1|BA|G|2585
6SKG|1|BA|A|2586
6SKG|1|BA|C|2587
6SKG|1|BA|C|2588

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L10e

Chain Bj

50S ribosomal protein L40e