IL_6SKG_174

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6SKG|1|BA|G|2680, 6SKG|1|BA|A|2681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_174 not in the Motif Atlas

Homologous match to IL_4V9F_087

Geometric discrepancy: 0.2305

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

6SKG|1|BA|C|2614
6SKG|1|BA|U|2615
6SKG|1|BA|C|2616
*
6SKG|1|BA|G|2678
6SKG|1|BA|U|2679
6SKG|1|BA|G|2680
6SKG|1|BA|A|2681
6SKG|1|BA|G|2682

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BL

50S ribosomal protein L14