IL_6SKG_185

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UCUAC*GGCAG

Length

10 nucleotides

Bulged bases

6SKG|1|BA|U|2794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_185 not in the Motif Atlas

Homologous match to IL_4V9F_094

Geometric discrepancy: 0.1648

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

6SKG|1|BA|U|2792
6SKG|1|BA|C|2793
6SKG|1|BA|U|2794
6SKG|1|BA|A|2795
6SKG|1|BA|C|2796
*
6SKG|1|BA|G|2821
6SKG|1|BA|G|2822
6SKG|1|BA|C|2823
6SKG|1|BA|A|2824
6SKG|1|BA|G|2825

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BY

50S ribosomal protein L24e

Chain Bc

50S ribosomal protein L31e