IL_6SKG_186

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UU*AUAG

Length

6 nucleotides

Bulged bases

6SKG|1|BA|U|2815, 6SKG|1|BA|A|2816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_186 not in the Motif Atlas

Geometric match to IL_5J7L_349

Geometric discrepancy: 0.1082

The information below is about IL_5J7L_349

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6SKG|1|BA|U|2800
6SKG|1|BA|U|2801
*
6SKG|1|BA|A|2814
6SKG|1|BA|U|2815
6SKG|1|BA|A|2816
6SKG|1|BA|G|2817

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain BY

50S ribosomal protein L24e

Chain Bc

50S ribosomal protein L31e