IL_6SKG_188

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

6SKG|1|BA|A|2867

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_188 not in the Motif Atlas

Homologous match to IL_4V9F_096

Geometric discrepancy: 0.1077

The information below is about IL_4V9F_096

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6SKG|1|BA|G|2839
6SKG|1|BA|A|2840
6SKG|1|BA|U|2841
6SKG|1|BA|A|2842
6SKG|1|BA|A|2843
6SKG|1|BA|G|2844
*
6SKG|1|BA|C|2864
6SKG|1|BA|G|2865
6SKG|1|BA|A|2866
6SKG|1|BA|A|2867
6SKG|1|BA|G|2868
6SKG|1|BA|C|2869

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L6

Chain BK

50S ribosomal protein L13

Chain Bj

50S ribosomal protein L40e