IL_6SKG_193

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GAAG*CGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_193 not in the Motif Atlas

Homologous match to IL_4V9F_100

Geometric discrepancy: 0.1995

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

6SKG|1|BA|G|2982
6SKG|1|BA|A|2983
6SKG|1|BA|A|2984
6SKG|1|BA|G|2985
*
6SKG|1|BA|C|2992
6SKG|1|BA|G|2993
6SKG|1|BA|A|2994
6SKG|1|BA|C|2995

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Ak

30S ribosomal protein S8e

Chain BS

50S ribosomal protein L19e