IL_6SKG_199
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- GGUGUAC*GGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SKG_199 not in the Motif Atlas
- Homologous match to IL_4V9F_106
- Geometric discrepancy: 0.1264
- The information below is about IL_4V9F_106
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
6SKG|1|BB|G|76
6SKG|1|BB|G|77
6SKG|1|BB|U|78
6SKG|1|BB|G|79
6SKG|1|BB|U|80
6SKG|1|BB|A|81
6SKG|1|BB|C|82
*
6SKG|1|BB|G|102
6SKG|1|BB|G|103
6SKG|1|BB|A|104
6SKG|1|BB|A|105
6SKG|1|BB|A|106
6SKG|1|BB|C|107
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BJ
- 50S ribosomal protein L10e
- Chain BT
- 50S ribosomal protein L18Ae
- Chain Ba
- 50S ribosomal protein L30
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