IL_6SKG_206

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GUGG(5MC)AG*(5MC)GGUAA(OMU)AC

Length

16 nucleotides

Bulged bases

6SKG|1|Aa|A|477, 6SKG|1|Aa|OMU|479, 6SKG|1|Aa|A|480

QA status

Modified nucleotides: 5MC, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|Aa|G|460
6SKG|1|Aa|U|461
6SKG|1|Aa|G|462
6SKG|1|Aa|G|463
6SKG|1|Aa|5MC|464
6SKG|1|Aa|A|465
6SKG|1|Aa|G|466
*
6SKG|1|Aa|5MC|473
6SKG|1|Aa|G|474
6SKG|1|Aa|G|475
6SKG|1|Aa|U|476
6SKG|1|Aa|A|477
6SKG|1|Aa|A|478
6SKG|1|Aa|OMU|479
6SKG|1|Aa|A|480
6SKG|1|Aa|C|481

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ac

30S ribosomal protein S3

Chain Ao

30S ribosomal protein S12