IL_6SKG_215

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UGAAC*GGAUGUG

Length

12 nucleotides

Bulged bases

6SKG|1|BA|U|293

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_215 not in the Motif Atlas

Homologous match to IL_4V9F_108

Geometric discrepancy: 0.1006

The information below is about IL_4V9F_108

Detailed Annotation

Kink-turn with embedded cWW pair

Broad Annotation

No text annotation

Motif group

IL_65996.1

Basepair signature

cWW-L-cWW-L-tSH-R-cWW

Number of instances in this motif group

4

Unit IDs

6SKG|1|BA|U|265
6SKG|1|BA|G|266
6SKG|1|BA|A|267
6SKG|1|BA|A|268
6SKG|1|BA|C|269
*
6SKG|1|BA|G|290
6SKG|1|BA|G|291
6SKG|1|BA|A|292
6SKG|1|BA|U|293
6SKG|1|BA|G|294
6SKG|1|BA|U|295
6SKG|1|BA|G|296

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L7Ae

Chain BP

50S ribosomal protein L15e

Chain Bo

Nucleic acid-binding protein, containing C2H2 zinc-finger