IL_6SKG_225

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CC*GC(OMG)

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_225 not in the Motif Atlas

Geometric match to IL_5TBW_101

Geometric discrepancy: 0.2372

The information below is about IL_5TBW_101

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6SKG|1|BA|C|1495
6SKG|1|BA|C|1496
*
6SKG|1|BA|G|1506
6SKG|1|BA|C|1507
6SKG|1|BA|OMG|1508

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain BP

50S ribosomal protein L15e

Chain Bh

50S ribosomal protein L37e