IL_6SKG_228

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(5MC)CAG*C(OMG)

Length

6 nucleotides

Bulged bases

6SKG|1|BA|C|1966

QA status

Modified nucleotides: 5MC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SKG_228 not in the Motif Atlas

Homologous match to IL_4V9F_066

Geometric discrepancy: 0.1641

The information below is about IL_4V9F_066

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

6SKG|1|BA|5MC|1965
6SKG|1|BA|C|1966
6SKG|1|BA|A|1967
6SKG|1|BA|G|1968
*
6SKG|1|BA|C|2015
6SKG|1|BA|OMG|2016

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2