IL_6SKG_230

3D structure

PDB id

6SKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

(OMC)GAAAUUC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6SKG|1|BA|A|2051, 6SKG|1|BA|U|2057

QA status

Modified nucleotides: OMC, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKG|1|BA|OMC|2047
6SKG|1|BA|G|2048
6SKG|1|BA|A|2049
6SKG|1|BA|A|2050
6SKG|1|BA|A|2051
6SKG|1|BA|U|2052
6SKG|1|BA|U|2053
6SKG|1|BA|C|2054
6SKG|1|BA|5MC|2055
6SKG|1|BA|U|2056
6SKG|1|BA|U|2057
6SKG|1|BA|G|2058
*
6SKG|1|BA|C|2074
6SKG|1|BA|5MC|2075
6SKG|1|BA|U|2076
6SKG|1|BA|G|2077

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain Bk

LSU ribosomal protein L41E

Chain Bp

Predicted exosome subunit, UPF0023 family