IL_6SNT_010

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UG*UUUGUA

Length

8 nucleotides

Bulged bases

6SNT|1|1|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_010 not in the Motif Atlas

Homologous match to IL_5TBW_010

Geometric discrepancy: 0.2944

The information below is about IL_5TBW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37379.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6SNT|1|1|U|169
6SNT|1|1|G|170
*
6SNT|1|1|U|248
6SNT|1|1|U|249
6SNT|1|1|U|250
6SNT|1|1|G|251
6SNT|1|1|U|252
6SNT|1|1|A|253

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ai

60S ribosomal protein L35-A

Chain n

60S ribosomal protein L8-A

Chain r

60S ribosomal protein L13-A