IL_6SNT_013

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

6SNT|1|1|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_013 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.122

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6SNT|1|1|G|337
6SNT|1|1|A|338
6SNT|1|1|C|339
*
6SNT|1|3|G|25
6SNT|1|3|U|26

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Chain 3

5.8S rRNA

Nearby chains

Chain ar

60S ribosomal protein L26-A

Chain j

60S ribosomal protein L4-A