IL_6SNT_014
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 6SNT|1|1|A|398, 6SNT|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_014 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.1027
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6SNT|1|1|G|376
6SNT|1|1|A|377
6SNT|1|1|A|378
6SNT|1|1|C|379
*
6SNT|1|1|G|390
6SNT|1|1|A|391
6SNT|1|1|G|392
6SNT|1|1|U|393
6SNT|1|1|G|394
6SNT|1|1|A|395
6SNT|1|1|A|396
6SNT|1|1|A|397
6SNT|1|1|A|398
6SNT|1|1|A|399
6SNT|1|1|G|400
6SNT|1|1|U|401
6SNT|1|1|A|402
6SNT|1|1|C|403
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain ae
- 60S ribosomal protein L39
- Chain ar
- 60S ribosomal protein L26-A
- Chain v
- 60S ribosomal protein L17-A
Coloring options: