IL_6SNT_015
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_015 not in the Motif Atlas
- Homologous match to IL_8C3A_016
- Geometric discrepancy: 0.0813
- The information below is about IL_8C3A_016
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6SNT|1|1|G|404
6SNT|1|1|U|405
6SNT|1|1|G|406
6SNT|1|1|A|407
6SNT|1|1|A|408
6SNT|1|1|A|409
6SNT|1|1|U|410
*
6SNT|1|3|A|13
6SNT|1|3|C|14
6SNT|1|3|G|15
6SNT|1|3|G|16
6SNT|1|3|A|17
6SNT|1|3|U|18
6SNT|1|3|C|19
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
- Chain 3
- 5.8S rRNA
Nearby chains
- Chain al
- 60S ribosomal protein L32
- Chain j
- 60S ribosomal protein L4-A
- Chain v
- 60S ribosomal protein L17-A
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