IL_6SNT_026

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_026 not in the Motif Atlas

Homologous match to IL_8C3A_028

Geometric discrepancy: 0.0993

The information below is about IL_8C3A_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SNT|1|1|C|758
6SNT|1|1|U|759
6SNT|1|1|G|760
6SNT|1|1|A|761
6SNT|1|1|U|762
6SNT|1|1|G|763
*
6SNT|1|1|C|768
6SNT|1|1|G|769
6SNT|1|1|G|770
6SNT|1|1|A|771
6SNT|1|1|U|772
6SNT|1|1|G|773

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ab

60S ribosomal protein L42-A

Chain ap

60S ribosomal protein L28

Chain r

60S ribosomal protein L13-A