IL_6SNT_029

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GU*GGC

Length

5 nucleotides

Bulged bases

6SNT|1|1|G|860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_029 not in the Motif Atlas

Geometric match to IL_4V9F_026

Geometric discrepancy: 0.1175

The information below is about IL_4V9F_026

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

69

Unit IDs

6SNT|1|1|G|833
6SNT|1|1|U|834
*
6SNT|1|1|G|859
6SNT|1|1|G|860
6SNT|1|1|C|861

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain aa

60S ribosomal protein L43-A

Chain h

60S ribosomal protein L2-A

Chain x

60S ribosomal protein L19-A