IL_6SNT_036

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUAUC*GAAG

Length

10 nucleotides

Bulged bases

6SNT|1|1|U|981, 6SNT|1|1|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SNT|1|1|C|977
6SNT|1|1|G|978
6SNT|1|1|U|979
6SNT|1|1|A|980
6SNT|1|1|U|981
6SNT|1|1|C|982
*
6SNT|1|1|G|1101
6SNT|1|1|A|1102
6SNT|1|1|A|1103
6SNT|1|1|G|1104

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ao

60S ribosomal protein L29

Chain m

60S ribosomal protein L7-A

Chain w

60S ribosomal protein L18-A