IL_6SNT_039

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_039 not in the Motif Atlas

Homologous match to IL_8C3A_042

Geometric discrepancy: 0.129

The information below is about IL_8C3A_042

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6SNT|1|1|A|997
6SNT|1|1|A|998
*
6SNT|1|1|U|1050
6SNT|1|1|U|1051
6SNT|1|1|U|1052

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA

Chain k

60S ribosomal protein L5

Chain p

60S ribosomal protein L10

Chain z

60S ribosomal protein L21-A