IL_6SNT_053

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUAGACAGCC*GGCCGAA

Length

18 nucleotides

Bulged bases

6SNT|1|1|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SNT|1|1|U|1218
6SNT|1|1|C|1219
6SNT|1|1|U|1220
6SNT|1|1|A|1221
6SNT|1|1|G|1222
6SNT|1|1|A|1223
6SNT|1|1|C|1224
6SNT|1|1|A|1225
6SNT|1|1|G|1226
6SNT|1|1|C|1227
6SNT|1|1|C|1228
*
6SNT|1|1|G|1281
6SNT|1|1|G|1282
6SNT|1|1|C|1283
6SNT|1|1|C|1284
6SNT|1|1|G|1285
6SNT|1|1|A|1286
6SNT|1|1|A|1287

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ad

Ubiquitin-60S ribosomal protein L40

Chain y

60S ribosomal protein L20-A