IL_6SNT_056
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAG*CG
- Length
- 5 nucleotides
- Bulged bases
- 6SNT|1|1|A|1386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_056 not in the Motif Atlas
- Homologous match to IL_8C3A_062
- Geometric discrepancy: 0.0913
- The information below is about IL_8C3A_062
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
6SNT|1|1|C|1385
6SNT|1|1|A|1386
6SNT|1|1|G|1387
*
6SNT|1|1|C|1420
6SNT|1|1|G|1421
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain al
- 60S ribosomal protein L32
- Chain j
- 60S ribosomal protein L4-A
- Chain l
- 60S ribosomal protein L6-B
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