IL_6SNT_060
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUCAAC*GGAC
- Length
- 10 nucleotides
- Bulged bases
- 6SNT|1|1|G|1514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_060 not in the Motif Atlas
- Homologous match to IL_8C3A_066
- Geometric discrepancy: 0.0906
- The information below is about IL_8C3A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93630.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
6SNT|1|1|G|1500
6SNT|1|1|U|1501
6SNT|1|1|C|1502
6SNT|1|1|A|1503
6SNT|1|1|A|1504
6SNT|1|1|C|1505
*
6SNT|1|1|G|1513
6SNT|1|1|G|1514
6SNT|1|1|A|1515
6SNT|1|1|C|1516
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain ae
- 60S ribosomal protein L39
- Chain v
- 60S ribosomal protein L17-A
- Chain x
- 60S ribosomal protein L19-A
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