IL_6SNT_084
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAAUG*CGC
- Length
- 8 nucleotides
- Bulged bases
- 6SNT|1|1|U|2209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_084 not in the Motif Atlas
- Homologous match to IL_8C3A_092
- Geometric discrepancy: 0.4353
- The information below is about IL_8C3A_092
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58579.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SNT|1|1|G|2206
6SNT|1|1|A|2207
6SNT|1|1|A|2208
6SNT|1|1|U|2209
6SNT|1|1|G|2210
*
6SNT|1|1|C|2235
6SNT|1|1|G|2236
6SNT|1|1|C|2237
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain B
- 40S ribosomal protein S1-A
- Chain h
- 60S ribosomal protein L2-A
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