IL_6SNT_089
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GAA*UACC
- Length
- 7 nucleotides
- Bulged bases
- 6SNT|1|1|A|2397, 6SNT|1|1|C|2983
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_089 not in the Motif Atlas
- Homologous match to IL_8C3A_097
- Geometric discrepancy: 0.0792
- The information below is about IL_8C3A_097
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54678.7
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6SNT|1|1|G|2396
6SNT|1|1|A|2397
6SNT|1|1|A|2398
*
6SNT|1|1|U|2981
6SNT|1|1|A|2982
6SNT|1|1|C|2983
6SNT|1|1|C|2984
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA
Nearby chains
- Chain NC
- Uncharacterized protein YEL057C
- Chain i
- 60S ribosomal protein L3
- Chain v
- 60S ribosomal protein L17-A
Coloring options: