IL_6SNT_103

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_103 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1111

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6SNT|1|1|U|2835
6SNT|1|1|C|2836
6SNT|1|1|A|2837
6SNT|1|1|A|2838
6SNT|1|1|G|2839
*
6SNT|1|1|C|2849
6SNT|1|1|G|2850
6SNT|1|1|A|2851
6SNT|1|1|C|2852
6SNT|1|1|A|2853

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ad

Ubiquitin-60S ribosomal protein L40

Chain p

60S ribosomal protein L10