IL_6SNT_106

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

6SNT|1|1|A|2941, 6SNT|1|1|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_106 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.0906

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6SNT|1|1|C|2881
6SNT|1|1|U|2882
*
6SNT|1|1|A|2940
6SNT|1|1|A|2941
6SNT|1|1|C|2942
6SNT|1|1|G|2943

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain i

60S ribosomal protein L3