IL_6SNT_128

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CG*UUG

Length

5 nucleotides

Bulged bases

6SNT|1|1|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_128 not in the Motif Atlas

Homologous match to IL_5TBW_131

Geometric discrepancy: 0.226

The information below is about IL_5TBW_131

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6SNT|1|1|C|3324
6SNT|1|1|G|3325
*
6SNT|1|1|U|3381
6SNT|1|1|U|3382
6SNT|1|1|G|3383

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain am

60S ribosomal protein L31-A

Chain i

60S ribosomal protein L3