IL_6SNT_142

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUAUUU*AUUCA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_142 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.1224

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6SNT|1|2|U|117
6SNT|1|2|U|118
6SNT|1|2|A|119
6SNT|1|2|U|120
6SNT|1|2|U|121
6SNT|1|2|U|122
*
6SNT|1|2|A|295
6SNT|1|2|U|296
6SNT|1|2|U|297
6SNT|1|2|C|298
6SNT|1|2|A|299

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain I

40S ribosomal protein S8-A