IL_6SNT_156

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUA*UA

Length

5 nucleotides

Bulged bases

6SNT|1|2|U|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_156 not in the Motif Atlas

Geometric match to IL_4V88_407

Geometric discrepancy: 0.1002

The information below is about IL_4V88_407

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6SNT|1|2|U|439
6SNT|1|2|U|440
6SNT|1|2|A|441
*
6SNT|1|2|U|463
6SNT|1|2|A|464

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain J

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S24-A