IL_6SNT_160

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CGAGGAAC

Length

11 nucleotides

Bulged bases

6SNT|1|2|A|541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SNT|1|2|G|514
6SNT|1|2|A|515
6SNT|1|2|G|516
*
6SNT|1|2|C|536
6SNT|1|2|G|537
6SNT|1|2|A|538
6SNT|1|2|G|539
6SNT|1|2|G|540
6SNT|1|2|A|541
6SNT|1|2|A|542
6SNT|1|2|C|543

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain e

40S ribosomal protein S30-A