IL_6SNT_209
3D structure
- PDB id
- 6SNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome stalled on SDD1 mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGAUA*UUCAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SNT_209 not in the Motif Atlas
- Geometric match to IL_4V88_462
- Geometric discrepancy: 0.0973
- The information below is about IL_4V88_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_82488.1
- Basepair signature
- cWW-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6SNT|1|2|G|1540
6SNT|1|2|G|1541
6SNT|1|2|G|1542
6SNT|1|2|A|1543
6SNT|1|2|U|1544
6SNT|1|2|A|1545
*
6SNT|1|2|U|1566
6SNT|1|2|U|1567
6SNT|1|2|C|1568
6SNT|1|2|A|1569
6SNT|1|2|A|1570
6SNT|1|2|C|1571
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA
Nearby chains
- Chain S
- 40S ribosomal protein S18-A
- Chain T
- 40S ribosomal protein S19-A
- Chain Z
- 40S ribosomal protein S25-A
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