IL_6SNT_234

3D structure

PDB id

6SNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome stalled on SDD1 mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UU*AGUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SNT_234 not in the Motif Atlas

Geometric match to IL_5TBW_501

Geometric discrepancy: 0.1902

The information below is about IL_5TBW_501

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6SNT|1|1|U|177
6SNT|1|1|U|178
*
6SNT|1|1|A|238
6SNT|1|1|G|239
6SNT|1|1|U|240
6SNT|1|1|G|241

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1), rRNA

Nearby chains

Chain ag

60S ribosomal protein L37-A

Chain ai

60S ribosomal protein L35-A

Chain r

60S ribosomal protein L13-A