IL_6SPB_040
3D structure
- PDB id
- 6SPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGAGGUUGGCUUAGAAGCAGCCACCCUUUAAAG*CAC
- Length
- 36 nucleotides
- Bulged bases
- 6SPB|1|A|G|1046, 6SPB|1|A|A|1047, 6SPB|1|A|U|1051, 6SPB|1|A|G|1052, 6SPB|1|A|G|1053, 6SPB|1|A|C|1054, 6SPB|1|A|U|1056, 6SPB|1|A|C|1062, 6SPB|1|A|A|1063, 6SPB|1|A|C|1070, 6SPB|1|A|U|1073, 6SPB|1|A|A|1074, 6SPB|1|A|A|1075, 6SPB|1|A|A|1093
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPB|1|A|G|1045
6SPB|1|A|G|1046
6SPB|1|A|A|1047
6SPB|1|A|G|1048
6SPB|1|A|G|1049
6SPB|1|A|U|1050
6SPB|1|A|U|1051
6SPB|1|A|G|1052
6SPB|1|A|G|1053
6SPB|1|A|C|1054
6SPB|1|A|U|1055
6SPB|1|A|U|1056
6SPB|1|A|A|1057
6SPB|1|A|G|1058
6SPB|1|A|A|1059
6SPB|1|A|A|1060
6SPB|1|A|G|1061
6SPB|1|A|C|1062
6SPB|1|A|A|1063
6SPB|1|A|G|1064
6SPB|1|A|C|1065
6SPB|1|A|C|1066
6SPB|1|A|A|1067
6SPB|1|A|C|1068
6SPB|1|A|C|1069
6SPB|1|A|C|1070
6SPB|1|A|U|1071
6SPB|1|A|U|1072
6SPB|1|A|U|1073
6SPB|1|A|A|1074
6SPB|1|A|A|1075
6SPB|1|A|A|1076
6SPB|1|A|G|1077
*
6SPB|1|A|C|1092
6SPB|1|A|A|1093
6SPB|1|A|C|1094
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 6
- 50S ribosomal protein L36
- Chain I
- 50S ribosomal protein L11
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
Coloring options: