IL_6SPB_054

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGGUAG*CGAGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPB_054 not in the Motif Atlas

Geometric match to IL_7A0S_027

Geometric discrepancy: 0.3716

The information below is about IL_7A0S_027

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_81631.1

Basepair signature

cWW-L-R-cSH-R-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6SPB|1|A|U|1460
6SPB|1|A|G|1461
6SPB|1|A|G|1462
6SPB|1|A|U|1463
6SPB|1|A|A|1464
6SPB|1|A|G|1465
*
6SPB|1|A|C|1500
6SPB|1|A|G|1501
6SPB|1|A|A|1502
6SPB|1|A|G|1503
6SPB|1|A|A|1504
6SPB|1|A|G|1505

Current chains

Chain A

23S ribosomal RNA

Nearby chains