IL_6SPB_071
3D structure
- PDB id
- 6SPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 6SPB|1|A|A|1925, 6SPB|1|A|U|1931, 6SPB|1|A|U|1950
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPB_071 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.1179
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
6SPB|1|A|C|1921
6SPB|1|A|G|1922
6SPB|1|A|A|1923
6SPB|1|A|A|1924
6SPB|1|A|A|1925
6SPB|1|A|U|1926
6SPB|1|A|U|1927
6SPB|1|A|C|1928
6SPB|1|A|C|1929
6SPB|1|A|U|1930
6SPB|1|A|U|1931
6SPB|1|A|G|1932
*
6SPB|1|A|C|1948
6SPB|1|A|C|1949
6SPB|1|A|U|1950
6SPB|1|A|G|1951
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
Coloring options: