IL_6SPB_110
3D structure
- PDB id
- 6SPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGAUGGUAG*UGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6SPB_110 not in the Motif Atlas
- Homologous match to IL_7RQB_115
- Geometric discrepancy: 0.078
- The information below is about IL_7RQB_115
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.3
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6SPB|1|B|C|71
6SPB|1|B|G|72
6SPB|1|B|A|73
6SPB|1|B|U|74
6SPB|1|B|G|75
6SPB|1|B|G|76
6SPB|1|B|U|77
6SPB|1|B|A|78
6SPB|1|B|G|79
*
6SPB|1|B|U|97
6SPB|1|B|G|98
6SPB|1|B|A|99
6SPB|1|B|G|100
6SPB|1|B|A|101
6SPB|1|B|G|102
6SPB|1|B|U|103
6SPB|1|B|A|104
6SPB|1|B|G|105
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
Coloring options: