IL_6SPB_114

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUUGUGUAGGAUAG*CCUGG

Length

19 nucleotides

Bulged bases

6SPB|1|A|U|2098, 6SPB|1|A|G|2099, 6SPB|1|A|U|2105, 6SPB|1|A|A|2106

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPB|1|A|C|2094
6SPB|1|A|U|2095
6SPB|1|A|U|2096
6SPB|1|A|G|2097
6SPB|1|A|U|2098
6SPB|1|A|G|2099
6SPB|1|A|U|2100
6SPB|1|A|A|2101
6SPB|1|A|G|2102
6SPB|1|A|G|2103
6SPB|1|A|A|2104
6SPB|1|A|U|2105
6SPB|1|A|A|2106
6SPB|1|A|G|2107
*
6SPB|1|A|C|2165
6SPB|1|A|C|2166
6SPB|1|A|U|2167
6SPB|1|A|G|2168
6SPB|1|A|G|2169

Current chains

Chain A

23S ribosomal RNA

Nearby chains