IL_6SPB_115

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGGGAGG*CCAUCCUUGAAAUACCA

Length

24 nucleotides

Bulged bases

6SPB|1|A|A|2113, 6SPB|1|A|C|2148, 6SPB|1|A|C|2151, 6SPB|1|A|A|2156

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPB|1|A|U|2109
6SPB|1|A|G|2110
6SPB|1|A|G|2111
6SPB|1|A|G|2112
6SPB|1|A|A|2113
6SPB|1|A|G|2114
6SPB|1|A|G|2115
*
6SPB|1|A|C|2147
6SPB|1|A|C|2148
6SPB|1|A|A|2149
6SPB|1|A|U|2150
6SPB|1|A|C|2151
6SPB|1|A|C|2152
6SPB|1|A|U|2153
6SPB|1|A|U|2154
6SPB|1|A|G|2155
6SPB|1|A|A|2156
6SPB|1|A|A|2157
6SPB|1|A|A|2158
6SPB|1|A|U|2159
6SPB|1|A|A|2160
6SPB|1|A|C|2161
6SPB|1|A|C|2162
6SPB|1|A|A|2163

Current chains

Chain A

23S ribosomal RNA

Nearby chains