IL_6SPC_021

3D structure

PDB id

6SPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6SPC|1|a|A|566

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPC_021 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0857

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

6SPC|1|a|C|563
6SPC|1|a|G|564
6SPC|1|a|U|565
6SPC|1|a|A|566
6SPC|1|a|A|567
6SPC|1|a|A|568
6SPC|1|a|G|569
*
6SPC|1|a|C|874
6SPC|1|a|G|875

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain l

30S ribosomal protein S12

Chain q

30S ribosomal protein S17