IL_6SPC_024

3D structure

PDB id

6SPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GU*AAAC

Length

6 nucleotides

Bulged bases

6SPC|1|a|A|636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPC_024 not in the Motif Atlas

Geometric match to IL_4KQY_004

Geometric discrepancy: 0.2949

The information below is about IL_4KQY_004

Detailed Annotation

Minor groove platform

Broad Annotation

Minor groove platform

Motif group

IL_94991.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

17

Unit IDs

6SPC|1|a|G|591
6SPC|1|a|U|592
*
6SPC|1|a|A|634
6SPC|1|a|A|635
6SPC|1|a|A|636
6SPC|1|a|C|637

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain q

30S ribosomal protein S17