IL_6SPC_035

3D structure

PDB id

6SPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

6SPC|1|a|A|1388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPC_035 not in the Motif Atlas

Homologous match to IL_4LFB_035

Geometric discrepancy: 0.1964

The information below is about IL_4LFB_035

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

6SPC|1|a|G|916
6SPC|1|a|A|917
*
6SPC|1|a|U|1387
6SPC|1|a|A|1388
6SPC|1|a|C|1389

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5