IL_6SPC_051

3D structure

PDB id

6SPC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUAAC*GGG

Length

8 nucleotides

Bulged bases

6SPC|1|a|U|1439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPC_051 not in the Motif Atlas

Geometric match to IL_5J7L_065

Geometric discrepancy: 0.2384

The information below is about IL_5J7L_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31531.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

13

Unit IDs

6SPC|1|a|C|1438
6SPC|1|a|U|1439
6SPC|1|a|A|1440
6SPC|1|a|A|1441
6SPC|1|a|C|1442
*
6SPC|1|a|G|1449
6SPC|1|a|G|1450
6SPC|1|a|G|1451

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20