IL_6SPC_056
3D structure
- PDB id
- 6SPC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CAAUGGUCGGUACAAAGGGUUGC*GCUAAUCCCAUAAAACCGAUCGUAGUCCGGAUCGCAGUCUGCAACUCGACUGCGUGAAGUCG
- Length
- 85 nucleotides
- Bulged bases
- 6SPC|1|a|A|1233, 6SPC|1|a|U|1234, 6SPC|1|a|U|1237, 6SPC|1|a|C|1238, 6SPC|1|a|G|1239, 6SPC|1|a|G|1240, 6SPC|1|a|C|1243, 6SPC|1|a|U|1250, 6SPC|1|a|U|1251, 6SPC|1|a|C|1271, 6SPC|1|a|U|1272, 6SPC|1|a|A|1274, 6SPC|1|a|U|1275, 6SPC|1|a|U|1280, 6SPC|1|a|A|1282, 6SPC|1|a|A|1283, 6SPC|1|a|G|1287, 6SPC|1|a|U|1292, 6SPC|1|a|A|1293, 6SPC|1|a|C|1296, 6SPC|1|a|G|1298, 6SPC|1|a|A|1300, 6SPC|1|a|U|1301, 6SPC|1|a|G|1303, 6SPC|1|a|C|1304, 6SPC|1|a|U|1307, 6SPC|1|a|C|1308, 6SPC|1|a|U|1309, 6SPC|1|a|G|1310, 6SPC|1|a|C|1311, 6SPC|1|a|A|1312, 6SPC|1|a|A|1313, 6SPC|1|a|C|1314, 6SPC|1|a|U|1315, 6SPC|1|a|C|1316, 6SPC|1|a|G|1317, 6SPC|1|a|A|1318, 6SPC|1|a|C|1319, 6SPC|1|a|U|1320, 6SPC|1|a|G|1321, 6SPC|1|a|C|1322, 6SPC|1|a|G|1323, 6SPC|1|a|C|1330
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPC|1|a|C|1231
6SPC|1|a|A|1232
6SPC|1|a|A|1233
6SPC|1|a|U|1234
6SPC|1|a|G|1235
6SPC|1|a|G|1236
6SPC|1|a|U|1237
6SPC|1|a|C|1238
6SPC|1|a|G|1239
6SPC|1|a|G|1240
6SPC|1|a|U|1241
6SPC|1|a|A|1242
6SPC|1|a|C|1243
6SPC|1|a|A|1244
6SPC|1|a|A|1245
6SPC|1|a|A|1246
6SPC|1|a|G|1247
6SPC|1|a|G|1248
6SPC|1|a|G|1249
6SPC|1|a|U|1250
6SPC|1|a|U|1251
6SPC|1|a|G|1252
6SPC|1|a|C|1253
*
6SPC|1|a|G|1270
6SPC|1|a|C|1271
6SPC|1|a|U|1272
6SPC|1|a|A|1273
6SPC|1|a|A|1274
6SPC|1|a|U|1275
6SPC|1|a|C|1276
6SPC|1|a|C|1277
6SPC|1|a|C|1278
6SPC|1|a|A|1279
6SPC|1|a|U|1280
6SPC|1|a|A|1281
6SPC|1|a|A|1282
6SPC|1|a|A|1283
6SPC|1|a|A|1284
6SPC|1|a|C|1285
6SPC|1|a|C|1286
6SPC|1|a|G|1287
6SPC|1|a|A|1288
6SPC|1|a|U|1289
6SPC|1|a|C|1290
6SPC|1|a|G|1291
6SPC|1|a|U|1292
6SPC|1|a|A|1293
6SPC|1|a|G|1294
6SPC|1|a|U|1295
6SPC|1|a|C|1296
6SPC|1|a|C|1297
6SPC|1|a|G|1298
6SPC|1|a|G|1299
6SPC|1|a|A|1300
6SPC|1|a|U|1301
6SPC|1|a|C|1302
6SPC|1|a|G|1303
6SPC|1|a|C|1304
6SPC|1|a|A|1305
6SPC|1|a|G|1306
6SPC|1|a|U|1307
6SPC|1|a|C|1308
6SPC|1|a|U|1309
6SPC|1|a|G|1310
6SPC|1|a|C|1311
6SPC|1|a|A|1312
6SPC|1|a|A|1313
6SPC|1|a|C|1314
6SPC|1|a|U|1315
6SPC|1|a|C|1316
6SPC|1|a|G|1317
6SPC|1|a|A|1318
6SPC|1|a|C|1319
6SPC|1|a|U|1320
6SPC|1|a|G|1321
6SPC|1|a|C|1322
6SPC|1|a|G|1323
6SPC|1|a|U|1324
6SPC|1|a|G|1325
6SPC|1|a|A|1326
6SPC|1|a|A|1327
6SPC|1|a|G|1328
6SPC|1|a|U|1329
6SPC|1|a|C|1330
6SPC|1|a|G|1331
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
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