IL_6SPD_005

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6SPD_005 not in the Motif Atlas

Homologous match to IL_7RQB_006

Geometric discrepancy: 0.0975

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6SPD|1|A|G|188
6SPD|1|A|G|189
6SPD|1|A|A|190
6SPD|1|A|A|191
6SPD|1|A|C|192
6SPD|1|A|U|193
6SPD|1|A|G|194
*
6SPD|1|A|C|201
6SPD|1|A|U|202
6SPD|1|A|A|203
6SPD|1|A|A|204
6SPD|1|A|G|205
6SPD|1|A|U|206
6SPD|1|A|A|207
6SPD|1|A|C|208

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L35

Chain L

50S ribosomal protein L15

Chain X

50S ribosomal protein L28